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JOURNAL ARTICLES

  1. Mukhopadhyay, S., Singh, M., Ghosh, M. M., Chakrabarti, S., & Ganguli, S. (2024). Comparative Genomics and Characterization of Shigella flexneri Isolated from Urban Wastewater. Microbes and environments, 39(2), ME23105. https://doi.org/10.1264/jsme2.ME23105
  2. Dey, S. R., Ganguli, S., & De, M. (2024). Transcriptome Analysis from leaf during non-flowering vegetative growth phase of mango (Mangifera indica L. var Fazli) from Murshidabad district of West Bengal, India. International Journal of Advancement in Life Sciences Research, 7(2), 143-162. https://doi.org/10.31632/ijalsr.2024.v07i02.012
  3. Samanta, D., Das, D., Sinha, S., Mallick, B., Banerjee, R., Ganguli, S., & Roy, D. (2023). Transcriptome analysis reveals upregulated secondary metabolite pathways in micropropagated Lawsonia inermis L. Vegetos, 36(3), 1130-1138. https://doi.org/10.1007/s42535-023-00613-5
  4. Chakraborty, A., Ganguli, S., De, P., & Saha, S. (2023). An insight into the structural analysis of α-crystallin of habitat-specific fish: a computational approach. Journal of Proteins and Proteomics, 14(2), 111-127. https://doi.org/10.1007/s42485-023-00107-7
  5. Bhattacharya, A., Bhowmick, P., Ganguli, S., & Mitra, A. K. (2023). Evolutionary Insights into the Enzymes involved in the Biosynthesis of the Volatile Organic Compounds Isoprene and Pinene in Plants. Plant Science Today, 10(2), 253-262. https://orcid.org/0000-0001-5481-7436
  6. Bhowal, P., Roy, B., Ganguli, S., Igloi, G. L., & Banerjee, R. (2023). Elucidating the structure-function attributes of a trypanosomal arginyl-tRNA synthetase. Molecular and Biochemical Parasitology, 256, 111597. https://doi.org/10.1016/j.molbiopara.2023.111597
  7. Mukhopadhyay, M., Mukherjee, A., Ganguli, S., Chakraborti, A., Roy, S., Choudhury, S. S., … & Mitra, A. K. (2023). Marvels of Bacilli in soil amendment for plant-growth promotion toward sustainable development having futuristic socio-economic implications. Frontiers in microbiology, 14, 1293302. https://doi.org/10.3389/fmicb.2023.1293302
  8. Ganguly, K., Dutta, T., Ganguli, S., & Sengupta, M. (2023). Common structural attributes of tyrosinase variants are unlikely to determine differential retentions within endoplasmic reticulum: a homology modelling study with 45 variants. Proceedings of the Indian National Science Academy, 89(4), 825-836. https://doi.org/10.1007/s43538-023-00196-4
  9. Das, D., Mallick, B., Sinha, S., Ganguli, S., Samanta, D., Banerjee, R., & Roy, D. (2023). Unearthing the inhibitory potential of phytochemicals from Lawsonia inermis L. and some drugs against dengue virus protein NS1: an in silico approach. Journal of Biomolecular Structure and Dynamics, 1-18. https://doi.org/10.1080/07391102.2023.2298730. Epub ahead of print. PMID: 38157248.
  10. Sarkar, N., Chakravarty, R., Ganguli, S., Singh, S. P., Narayan, J., & Banerjee, A. (2022). A pilot study on some critical immune elements in HBV infection: evidence of Alpha-1 Antitrypsin as an immunological biomarker. Gastroenterology and Hepatology From Bed to Bench, 15(4), 377. 10.22037/ghfbb.v15i4.2587. PMCID: PMC9876771. PMID: 36762226
  11. Mukhopadhyay, S., Ganguli, S., & Chakrabarti, S. (2022). Exploring the functions and interactions of undeciphered proteins from Shigella flexneri. International Journal of Computational Biology and Drug Design, 15(1), 60-75. https://doi.org/10.1504/IJCBDD.2022.124772
  12. Mukhopadhyay, S., Chakrabarti, S., & Ganguli, S. (2022). Insights into the structure and dynamics of Shigella invasion proteins for use as potential drug targets. Journal of Environment and Sociobiology, 19(1), 37-42.ISSN: 0973-0834
  13. Bhattacharyya, S., De, S., Basu, S., Dhar, G. A., & Ganguli, S. (2022). Comparative Profiling of Rice Endospheric Bacterial Assemblages to Identify Climate Independent Core. Journal of Environment and Sociobiology, 137-145.
  14. Dhar, G. A., Ganguli, S., & Mallick, B. (2022). First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) CB Rob. from Indian Sundarbans. Data in Brief, 43, 108468. https://doi.org/10.1016/ j.dib.2022.108468 ISSN 2352-3409
  15. Gupta, S. G., Basu, S., & Ganguli, S. (2022). Repetitive Sequences in Monocot microRNAs – Targets for Future Bioengineering Strategies for Climate Resilient Crops. Journal of Environment and Sociobiology, 295-306.
  16. Basu, S., Das, K., Ghosh, M. M., Banerjee, R., Bagchi, S. S., & Ganguli, S. (2022). First report of gut bacterial dataset of a tribal Bhutia family from West Bengal, India. Data in Brief, 41, 107859. https://doi.org/10.1016/j.dib.2022.107859 ISSN 2352-3409
  17. Ghosh, S., Dawn, N., Basu, S., & Ganguli, S. (2022). Microbial Enrichment in Global Wastewater Niches Under Impact of Climate Change- A Computational Study. Journal of Environment and Sociobiology,19(2), 221-243.
  18. Das, K., Mukherjee, K., Ganguli, S., Pal, S., & Bagchi, S. S. (2021). The association between somatotype and nutritional status: a cross-sectional study among the adult Sabar males of Purulia, West Bengal, India. International Journal of Anthropology and Ethnology, 5, 1-16..https://doi.org/10.1186/s41257-021-00046-5
  19. Mukhopadhyay, M., Mitra, A. K., Choudhury, S. S., & Ganguli, S. (2021). Metagenome dataset of lateritic soil microbiota from Sadaipur, Birbhum, West Bengal, India. Data in Brief, 36, 107041.https://doi.org/10.1016/j.dib.2021.107041
  20. Ganguli, S., Mullick¹, R., Das, D., Samanta, D., & Roy, D. (2021). Areview on the potential of Bacosides as therapeutic lead molecules.International Research Journal of Plant Science, 12 (4), 1-10
  21. Basu, S., Das, R., Gupta, S., & Ganguli, S. (2021). Does Air Quality Influence the Spread of the SARS-COV2 in Metropolitan Cities?-A Case Study from Urban India. Current World Environment, 16(2), 628. http://dx.doi.org/10.12944/CWE.16.2.27
  22. Singh, M., Karmakar, R., Ganguli, S., & Ghosh, M. M. (2021). Report of Antibiotic Resistance in Urban and Rural Wastewaters from West Bengal, India. Journal of Pharmaceutical Research International, 33(53A), 274-285. https://doi.org/10.9734/jpri/2021/v33i53A33660
  23. Mukhopadhyay, S., Ganguli, S., & Chakrabarti, S. (2020). Shigella pathogenesis: molecular and computational insights. AIMS Molecular Science, 7(2), 99-121. https://www.aimspress.com/article/doi/10.3934/molsci.2020007
  24. Mukhopadhyay, S., Ganguli, S., & Chakrabarti, S. (2020). Functional Annotation of Pathogenesis Proteins in Shigella flexneri using Comparative Genomics. Journal of Environment and Sociobiology, 65-78.
  25. Guha, S., Das, S., & Ganguli, S. (2020). A Comparative Genomics Pipeline for In Silico Characterization and Functional Annotation of Short Hypothetical Proteins. Journal of Tropical Life Science, 10(2), 141-148. http://dx.doi.org/10.11594/jtls.10.02.06
  26. Das, K., Mukherjee, K., Chanak, M., Pal, S., Ganguli, S., Bagchi, S. S., & Bose, K. (2020). Age trends in under-nutrition among Sabar males of Purulia, West Bengal, India. Journal of Human Ecology, 70(1-3), 110-117. 10.31901/24566608.2020/70.1-3.2020
  27. Das, K., Mukherjee, K., Ganguli, S., Pal, S., & Bagchi, S. S. (2020). Age-related Variations in Anthropometry, Body Composition and Nutritional Status among the Adult Kheria Sabar Males of Purulia, West Bengal, India. Collegium antropologicum, 44(2), 73-80. https://doi.org/10.5671/ca.44.2.2
  28. Das, D., Samanta, D., Banerjee, R., Sinha, S., Mallick, B., Ganguli, S., & Roy, D. (2020). Insights into the phytochemical potential of Lawsonia inermis L. for future small molecule based therapeutic applications. Review. Int. Res. J, 11, 1-7. http:/dx.doi.org/10.14303/irjps. 2020.0
  29. Sengupta, D., Bhattacharya, G., Ganguli, S., & Sengupta, M. (2020). Structural insights and evaluation of the potential impact of missense variants on the interactions of SLIT2 with ROBO1/4 in cancer progression. Scientific Reports, 10(1), 21909. https://doi.org/10.1038/s41598-020-78882-2

BOOK CHAPTERS

  1. Mukhopadhyay, S., Karmakar, R., Chakrabarti, S., Ghosh, M. M., & Ganguli, S. (2024). Evaluating the Impact of Climate Change on Antimicrobial Resistance and Rise in Dysentery Using Next Generation Sequencing Based Approaches. In Microbiology-2.0 Update for a Sustainable Future (pp. 373-393). Singapore: Springer Nature Singapore. https://doi.org/10.1007/978-981-99-9617-9_17
  2. Dhar, G. A., Chaudhuri, D., Mallick, B., & Ganguli, S. (2024). Insights into economically important endophytic and rhizospheric bacteria of true mangroves of Indian Sundarbans using high throughput mapping. In Biotechnology of Emerging Microbes (pp. 299-325). Academic Press. https://doi.org/10.1016/B978-0-443-15397-6.00015-2
  3. Singh, M., Karmakar, R., Ganguli, S., & Ghosh, M. M. Metagenomics-Based Characterization of Microbial Diversity across Industrial Waste Dumping Sites. In Biohydrometallurgical Processes (pp. 90-107). CRC Press.
  4. Sarkar, M., Mondal, M., Bhattacharya, D., Basu, S., Mitra, A. K., & Ganguli, S. (2023). Computational modeling for exploring the therapeutic repertoire of lantibiotics. In Lantibiotics as Alternative Therapeutics (pp. 337-352). Academic Press.https://doi.org/10.1016/B978-0-323-99141-4.00012-6
  5. Chakravarty, D., Bhattacharya, D., Ganguli, S., & Ghosh, U. D. (2023). Targeting microbial biofilms using genomics-guided drug discovery. In Microbial Biofilms: Challenges and Advances in Metabolomic Study (pp. 315-324). Elsevier. https://doi.org/10.1016/B978-0-323-95715-1.00020-0
  6. Ganguli, S., Karmakar, R., Singh, M., & Ghosh, M. M. (2022). Metagenomics-guided assessment of water quality and predicting pathogenic load. In Handbook of Research on Monitoring and Evaluating the Ecological Health of Wetlands (pp. 71-91). IGI Global. 10.4018/978-1-7998-9498-8.ch005
  7. Souradip Basu, Sohini Gupta, Kaustav Das, Subrata Sankar Bagchi, & Sayak Ganguli. (2022). Tribal ethnomedicine: a rich source for future drugs. In IndigenousTraditional Knowledge (pp. 21–29). Ambika Prasad Research Foundation. https://doi.org/10.5281/zenodo.6418656
  8. Kundu, A., Ganguli, S., & Pal, A. (2022). Genomic designing towards biotic stress resistance in mungbean and urdbean. In Genomic designing for biotic stress resistant pulse crops (pp. 381-414). Cham: Springer International Publishing. https://doi.org/10.1007/978-3-030-91043-3_8
  9. Mondal, S. et al. (2021). A Pipeline for Assessment of Pathogenic Load in the Environment Using Microbiome Analysis. In Nath, M., Bhatt, D., Bhargava, P., Choudhary, D.K. (eds) Microbial Metatranscriptomics Belowground. Springer, Singapore. https://doi.org/10.1007/978-981-15-9758-9_23
  10. Mondal, S., Gupta, S., Singh, M., Pal, S., Das, K., Ghosh, M. M., … & Ganguli, S. (2021). A Pipeline for Assessment of Pathogenic Load in the Environment Using Microbiome Analysis. In Microbial Metatranscriptomics Belowground, 493-510. https://doi.org/10.1007/978-981-15-9758-9_20
  11. Basu, S, Karmakar, R, Gupta, S & Ganguli, S. (2021). Developing your “Resilience Bank account”- Are you ready for the next Pandemic? In Tripathy T. (eds) Covid- 19 and Year 2020 Volume 1 (pp. 54-65).
  12. Ganguli, S., Singh, P. K., & Pal, A. (2020). Transcriptome-based identification of small RNA in plants: The need for robust prediction algorithms. In Plant Small RNA (pp. 65-97). Academic Press.https://doi.org/10.1016/B978-0-12-817112-7.00004-3

POSTER & ORAL PRESENTATIONS

  1. Impact Of Global Climate Change on Shigellosis and New Horizons for Treatment. International Symposium on Environment and Climate Crises. Department Of Environmental Studies, St. Xavier’s College, (Autonomous) Kolkata. 20th December, 2019.
  2. Comparative Genomics to Identify Potential Drug Targets in Shigella. National Seminar on “Frontiers in Biological Sciences: Chapter III”. Department of Microbiology, St. Xavier’s College, (Autonomous) Kolkata. 21st and 22nd September, 2019.
  3. Functional Annotation of Pathogenesis Proteins in Shigella flexneri using Comparative Genomics. National Seminar on Water Conservation and Harvesting Focusing Biodiversity Issues and Management. Social Environmental and Biological Association (SEBA). Jadavpur University, Kolkata. 8th February, 2020.
  4. A Structural Bioinformatic Approach to Evaluate Shigella Invasion Proteins as Emerging Therapeutic Targets. International Conference on Climate Change: Global Cooperation. St. Xavier’s College, (Autonomous) Kolkata. 26th and 27th August, 2022 (Awarded 3rd prize).
  5. Pangenome Analysis of Shigella flexneri Strains to Explore the Potential of Core Genes as Promising Therapeutic Targets. International Seminar on Recent Trends in Microbiology. Department Of Microbiology, Vijaygarh Jyotish Ray College, Kolkata. 18th May, 2022.
  6. Insights Into the Structure and Dynamics of Shigella Invasion Proteins for Use as Potential Drug Targets. ‘When Science Meets Life’ – A Symposium of The Society of Biological Chemists (I), Kolkata Chapter. Sister Nivedita University, West Bengal. 9th -10th April, 2022
  7. Evaluating The Antimicrobial and Cytotoxic Activities of Ethnomedicinal Plants to Propose New Drug Candidates Against Multidrug Resistant Shigella. International Symposium on Biotechnology. 12th & 13th October, 2023. Post Graduate and Research Department of Biotechnology. St. Xavier’s College, (Autonomous) Kolkata.
  8. Virtual Screening of Herbal Product Library to Propose New Chemical Entities Effective Against Shigella Associated Diarrhoea. Presented At: 1st International Conference on Drug Discovery and Development for Infectious Diseases: Cutting Edge Research and Challenges 3rd and 4th March, 2023 Organized By: Eminent College of Pharmaceutical Technology.
  9. Poster Presentation at an International conference of 21st All India Congress of Genetics and Genomics (AICGG,2024) in Jadavpur University (5th -7th February, 2024). The title of the presentation is “Insights into the therapeutic potential of Non-Timber Forest Products across the Ethnic Tribes, West Bengal, India”.
  10. Poster Presentation at an International conference of Modern Perspectives of Chemistry in Biology (MPCB,2024) in St. Xavier’s College (Autonomous), Kolkata (6th January, 2024). The title of the presentation is “A Nutrigenomics Perspective into the Ancient Gut – Role of Non-Timber Forest Products”.
  11. Poster Presentation at an International conference of Student Conference on Conservation Science (SCCS 2023) in University of Cambridge (28th -30th March, 2023). The title of the presentation is “Insights into the Gut, Dietary Practices and Subsistence patterns from an Indian Foothill Tribe.”
  12. Oral presentation at an international conference of Translating Human Evolutionary History to Precision Medicine (ADNAT 2023) in Banaras Hindu University (10th-12th March, 2023). The title of the presentation is “Correlating Diet Practices and Gut Bacterial Profiles from a few Ethnic Tribal groups of West Bengal, India.”
  13. Poster Presentation at a symposium of the Society of Biological Chemists (I), Kolkata Chapter in Sister Nivedita University (9 th- 10 th April, 2022). The title of the presentation is “Dietary intake and uniformity of the gut microbiome – A case study from a Bhutia Tribal Family of West Bengal.”
  14. Oral Presentation at Indian Anthropological Congress (IAC) in collaboration with Department of Anthropology, University of Hyderabad organized by INCAA on Anthropology and Bio-Cultural Diversity in India: Retrospect & Prospect (21st- 23rd February, 2022). The title of the presentation is “Insight into the applications of Pharmacogenomics on Gut Microbiome and Tribal Ethnomedicine.”
  15. Oral presentation at International Symposium in Amrita Vishwa Vidyapeetham, CHARM at University of California San Diego, Bugwork Inc. and C-CAMP organized by School of Biotechnology on Anti-Microbial Resistance (24th-26th February, 2021). The title of the presentation is “What does the tribal child gut microbiome tell us- a comparison of Bhutia, Mech and Sabar guts.”
  16. Dhar G.A., Basu S., Ghosh M.M., Bagchi S.S., & Ganguli S. (2024). Isolation, Genome Analysis and Bioprospecting of a putative probiotic fungi isolated from tribal gut. 21st All India Congress of Genetics and Genomics & International Special Symposium on Environmental Toxicogenomics: Ecosystem Health and Sustainability – Challenges and way forward, Jadavpur University, Kolkata.
  17. Exploring metagenome-based disease susceptibility predictions in three indigenous tribal families of West Bengal, India. International Symposium on Biotechnology (ISBT), St. Xavier’s College, Kolkata.
  18. Insights into potential disease-causing variants in three indigenous tribes of West Bengal, India. 23rd Annual Convention of Association for the Promotion of DNA Fingerprinting & other DNA Technologies (ADNAT), Banaras Hindu University, Varanasi.
  19. Creating a Mangrove endophyte bacterial collection for targeted genome editing. International Seminar and Workshop on CRISPR/Cas-based Plant Functional Genomics & Computational Modelling, CSIR – North East Institute of Science and Technology, Jorhat, Assam.
  20. Comparative Taxonomic and Functional Characterization of rhizospheric bacterial associations of true mangroves Sonneratia apetala and Avicennia marina from the Indian Sundarbans. International Conference on Climate Change: Global Cooperation, St. Xavier’s College, Kolkata.
  21. Do Mangroves have unique rhizospheric microbiomes – Insights from Indian Sundarbans. When Science Meets Life – A Symposium of the Society of Biological Chemists, Kolkata Chapter, Sister Nivedita University, New Town.